Lectures by the Computational Molecular Biology Department at the Max Planck Institute for Molecular Genetics

Genexpression und -regulation

Seminar im SoSe 2007

Seminar
Nr. 19 724
SWS 2
Credits 4
Termine (Time) Di., 14-16 Uhr
Raum (Place) Hörsaal, EG,
MPI für Molekulare Genetik, Ihnestr. 73
Schwerpunktbreich: C
Dozenten Martin Vingron
Utz J. Pape
 

Neu + wichtig

  • Das Seminar am 24.5.2007 ist im Seminarraum im EG vom MPI. Alle weiteren Termine dann im Hörsaal.

Inhalt

This course is intended for both final year Bachelor and Master students who are interested in understanding of computational methods to uncover gene expression and gene regulation. The course aims to introduce students to the basic literature of this research area. Therefore, a presentation of a selected article is required. (This course is obligatory for students attending the 'Analyse von Genexpressionsdaten' Software Praktikum.)

Datum Thema Vortragende(r)
17.02.07 Vorbesprechung Utz J. Pape
24.02.07 Improved scoring of functional groups from gene expression data by decorrelating GO graph structure Jonathan Göke
01.05.07 Feiertag
08.05.07 Reproducible Research and the Software Sweave Utz Pape
15.05.07 Using Bayesian Networks to Analyze Expression Data Jascha Silbermann
22.05.07 An empirical Bayes approach to inferring large-scale gene association networks Francois Lefebvre
29.05.07 Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks Sebastian Mackowiak
05.06.07 kein Seminar
12.06.07 How to reconstruct a large genetic network from n gene perturbations in fewer than n(2) easy steps. Thomas Engleitner
19.06.07 Reverse engineering of regulatory networks in human B cells Moritz Wade
26.06.07 Refinement and expansion of signaling pathways: The osmotic response network in yeast Tino Schüllermann
03.07.07 Genomic analysis of regulatory network dynamics reveals large topological changes Philipp Tretow
10.07.07 Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis Katrin Tebel
17.07.07 Non-transcriptional pathway features reconstructed from secondary effects of RNA interference Marco Rügen

Scheinkriterien

  • ca. 60-minütiger Seminarvortrag (50%)
  • 1-seitiges Handout (10%)
  • Seminarbeteiligung (40%)
  • Von jedem Teilnehmer wird erwartet, dass er vor jedem Seminartermin den/die entsprechenden Artikel gelesen hat. Pro Termin sind 3 Fragen schriftlich an pape'at'molgen.mpg.de zu senden.

Links

Homepage der Abteilung Computational Molecular Biology am Max-Plack-Institut für Molekulare Genetik.

Zum Studiengang Bioinformatik an der FU Berlin.

 

Anmerkungen und Fragen zu dieser Seite bitte an Utz Pape. Letzte Änderung: 03. April 2007